HL_6N1D_116

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6N1D|1|B16S|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_116 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.2336

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6N1D|1|B16S|C|342
6N1D|1|B16S|U|343
6N1D|1|B16S|A|344
6N1D|1|B16S|C|345
6N1D|1|B16S|G|346
6N1D|1|B16S|G|347

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BL14

50S ribosomal protein L14

Chain BL19

50S ribosomal protein L19

Chain BS20

30S ribosomal protein S20