HL_6N1D_133

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

6N1D|1|B16S|U|1136, 6N1D|1|B16S|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_133 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.3014

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6N1D|1|B16S|G|1134
6N1D|1|B16S|U|1135
6N1D|1|B16S|U|1136
6N1D|1|B16S|C|1137
6N1D|1|B16S|G|1138
6N1D|1|B16S|G|1139
6N1D|1|B16S|C|1140

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS09

30S ribosomal protein S9