HL_6N1D_134

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_134 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.3706

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6N1D|1|B16S|C|1165
6N1D|1|B16S|G|1166
6N1D|1|B16S|A|1167
6N1D|1|B16S|A|1169
6N1D|1|B16S|A|1170
6N1D|1|B16S|G|1171

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain AS10

30S ribosomal protein S10

Chain BS02

30S ribosomal protein S2

Chain BS07

30S ribosomal protein S7