HL_6N1D_152

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6N1D|1|B23S|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_152 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.1857

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6N1D|1|B23S|G|382
6N1D|1|B23S|U|383
6N1D|1|B23S|U|384
6N1D|1|B23S|C|385
6N1D|1|B23S|G|386
6N1D|1|B23S|U|387
6N1D|1|B23S|G|388
6N1D|1|B23S|G|389
6N1D|1|B23S|A|390
6N1D|1|B23S|G|391
6N1D|1|B23S|C|392

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL15

50S ribosomal protein L15

Chain BL28

50S ribosomal protein L28