HL_6N1D_154

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_154 not in the Motif Atlas

Homologous match to HL_7A0S_015

Geometric discrepancy: 0.1129

The information below is about HL_7A0S_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6N1D|1|B23S|C|462
6N1D|1|B23S|G|463
6N1D|1|B23S|U|464
6N1D|1|B23S|G|465
6N1D|1|B23S|A|466
6N1D|1|B23S|G|467

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL04

50S ribosomal protein L4

Chain BL34

50S ribosomal protein L34