HL_6N1D_159

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_159 not in the Motif Atlas

Homologous match to HL_4WF9_020

Geometric discrepancy: 0.1418

The information below is about HL_4WF9_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6N1D|1|B23S|G|629
6N1D|1|B23S|G|630
6N1D|1|B23S|A|631
6N1D|1|B23S|A|632
6N1D|1|B23S|A|633
6N1D|1|B23S|C|634

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL15

50S ribosomal protein L15

Chain BL35

50S ribosomal protein L35