HL_6N1D_163

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6N1D|1|B23S|A|781, 6N1D|1|B23S|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_163 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3573

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6N1D|1|B23S|U|779
6N1D|1|B23S|G|780
6N1D|1|B23S|A|781
6N1D|1|B23S|A|782
6N1D|1|B23S|A|783
6N1D|1|B23S|A|784
6N1D|1|B23S|G|785

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL02

50S ribosomal protein L2