HL_6N1D_166

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

6N1D|1|B23S|U|958, 6N1D|1|B23S|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_166 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1716

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6N1D|1|B23S|C|955
6N1D|1|B23S|G|956
6N1D|1|B23S|A|957
6N1D|1|B23S|U|958
6N1D|1|B23S|A|959
6N1D|1|B23S|A|960
6N1D|1|B23S|C|961
6N1D|1|B23S|G|962

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B5S

5S ribosomal RNA; 5S rRNA

Chain BL16

50S ribosomal protein L16