HL_6N1D_169

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

6N1D|1|B23S|U|1094, 6N1D|1|B23S|A|1095, 6N1D|1|B23S|A|1096, 6N1D|1|B23S|U|1097

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_169 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3163

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6N1D|1|B23S|C|1092
6N1D|1|B23S|G|1093
6N1D|1|B23S|U|1094
6N1D|1|B23S|A|1095
6N1D|1|B23S|A|1096
6N1D|1|B23S|U|1097
6N1D|1|B23S|A|1098
6N1D|1|B23S|G|1099

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL06

50S ribosomal protein L6

Chain BL36

50S ribosomal protein L36