HL_6N1D_176

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

6N1D|1|B23S|A|1453, 6N1D|1|B23S|U|1454, 6N1D|1|B23S|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_176 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5198

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6N1D|1|B23S|C|1450
6N1D|1|B23S|C|1452
6N1D|1|B23S|A|1453
6N1D|1|B23S|U|1454
6N1D|1|B23S|G|1455
6N1D|1|B23S|G|1456
6N1D|1|B23S|A|1457
6N1D|1|B23S|C|1458
6N1D|1|B23S|G|1459
6N1D|1|B23S|A|1460
6N1D|1|B23S|G|1461

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL17

50S ribosomal protein L17