HL_6N1D_177

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6N1D|1|B23S|C|1493, 6N1D|1|B23S|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_177 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.5171

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6N1D|1|B23S|G|1492
6N1D|1|B23S|C|1493
6N1D|1|B23S|A|1494
6N1D|1|B23S|A|1495
6N1D|1|B23S|A|1496
6N1D|1|B23S|U|1497
6N1D|1|B23S|C|1498

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL02

50S ribosomal protein L2