HL_6N1D_180

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6N1D|1|B23S|A|1614, 6N1D|1|B23S|A|1616, 6N1D|1|B23S|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_180 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1422

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6N1D|1|B23S|C|1612
6N1D|1|B23S|G|1613
6N1D|1|B23S|A|1614
6N1D|1|B23S|C|1615
6N1D|1|B23S|A|1616
6N1D|1|B23S|C|1617
6N1D|1|B23S|A|1618
6N1D|1|B23S|G|1619

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL22

50S ribosomal protein L22

Chain BL34

50S ribosomal protein L34