HL_6N1D_191

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_191 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.3385

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

6N1D|1|B23S|C|2143
6N1D|1|B23S|U|2144
6N1D|1|B23S|C|2145
6N1D|1|B23S|C|2146
6N1D|1|B23S|G|2147
6N1D|1|B23S|G|2148

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain BS11

30S ribosomal protein S11