HL_6N1D_203

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_203 not in the Motif Atlas

Homologous match to HL_7RQB_063

Geometric discrepancy: 0.1601

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6N1D|1|B23S|C|2594
6N1D|1|B23S|G|2595
6N1D|1|B23S|U|2596
6N1D|1|B23S|G|2597
6N1D|1|B23S|A|2598
6N1D|1|B23S|G|2599

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BATN

Transfer RNA; tRNA

Chain BL02

50S ribosomal protein L2