HL_6N1D_213
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GACU(QUO)UA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: QUO, MIA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N1D_213 not in the Motif Atlas
- Homologous match to HL_5E81_206
- Geometric discrepancy: 0.3116
- The information below is about HL_5E81_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N1D|1|BATN|G|30
6N1D|1|BATN|A|31
6N1D|1|BATN|C|32
6N1D|1|BATN|U|33
6N1D|1|BATN|QUO|34
6N1D|1|BATN|U|35
6N1D|1|BATN|A|36
6N1D|1|BATN|MIA|37
6N1D|1|BATN|A|38
6N1D|1|BATN|PSU|39
6N1D|1|BATN|C|40
Current chains
- Chain BATN
- A tRNA
Nearby chains
- Chain B16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain B23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain BMRN
- mRNA
- Chain BPTN
- Transfer RNA; tRNA
- Chain BS09
- 30S ribosomal protein S9
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