HL_6N1D_214

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_214 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.3669

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35941.1

Basepair signature

cWW-F

Number of instances in this motif group

1

Unit IDs

6N1D|1|BATN|C|47
6N1D|1|BATN|A|47|||A
6N1D|1|BATN|U|47|||B
6N1D|1|BATN|C|47|||C
6N1D|1|BATN|G|47|||D

Current chains

Chain BATN

A tRNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BL05

50S ribosomal protein L5