HL_6N1D_216

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGCUGGGAG

Length

10 nucleotides

Bulged bases

6N1D|1|BPTN|U|17, 6N1D|1|BPTN|G|18, 6N1D|1|BPTN|G|19, 6N1D|1|BPTN|G|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_216 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.2159

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6N1D|1|BPTN|C|13
6N1D|1|BPTN|A|14
6N1D|1|BPTN|G|15
6N1D|1|BPTN|C|16
6N1D|1|BPTN|U|17
6N1D|1|BPTN|G|18
6N1D|1|BPTN|G|19
6N1D|1|BPTN|G|20
6N1D|1|BPTN|A|21
6N1D|1|BPTN|G|22

Current chains

Chain BPTN

P-tRNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA