HL_6N1D_218

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

G(5MU)(PSU)CGAUCC

Length

9 nucleotides

Bulged bases

6N1D|1|BPTN|U|59

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_218 not in the Motif Atlas

Homologous match to HL_1SER_002

Geometric discrepancy: 0.2815

The information below is about HL_1SER_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6N1D|1|BPTN|G|53
6N1D|1|BPTN|5MU|54
6N1D|1|BPTN|PSU|55
6N1D|1|BPTN|C|56
6N1D|1|BPTN|G|57
6N1D|1|BPTN|A|58
6N1D|1|BPTN|U|59
6N1D|1|BPTN|C|60
6N1D|1|BPTN|C|61

Current chains

Chain BPTN

P-tRNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BL01

50S ribosomal protein L1