HL_6N1D_222
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 6N1D|1|B5S|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N1D_222 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.1814
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6N1D|1|B5S|U|34
6N1D|1|B5S|U|35
6N1D|1|B5S|C|36
6N1D|1|B5S|C|37
6N1D|1|B5S|C|38
6N1D|1|B5S|A|39
6N1D|1|B5S|U|40
6N1D|1|B5S|U|41
6N1D|1|B5S|C|42
6N1D|1|B5S|C|43
6N1D|1|B5S|G|44
6N1D|1|B5S|A|45
6N1D|1|B5S|A|46
6N1D|1|B5S|C|47
6N1D|1|B5S|A|48
Current chains
- Chain B5S
- 5s rRNA
Nearby chains
- Chain B23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain BL05
- 50S ribosomal protein L5
- Chain BL18
- 50S ribosomal protein L18
- Chain BL31
- 50S ribosomal protein L31
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