HL_6N1D_225

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

6N1D|1|B23S|A|2309, 6N1D|1|B23S|A|2310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_225 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.542

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6N1D|1|B23S|G|2304
6N1D|1|B23S|A|2305
6N1D|1|B23S|C|2306
6N1D|1|B23S|G|2307
6N1D|1|B23S|G|2308
6N1D|1|B23S|A|2309
6N1D|1|B23S|A|2310
6N1D|1|B23S|A|2311
6N1D|1|B23S|U|2312

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BATN

Transfer RNA; tRNA

Chain BL05

50S ribosomal protein L5