HL_6N2V_004

3D structure

PDB id

6N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manganese riboswitch from Xanthmonas oryzae bound to Mn(II)

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N2V_004 not in the Motif Atlas

Geometric match to HL_6CU1_002

Geometric discrepancy: 0.067

The information below is about HL_6CU1_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6N2V|1|B|G|24
6N2V|1|B|G|25
6N2V|1|B|A|26
6N2V|1|B|A|27
6N2V|1|B|A|28
6N2V|1|B|C|29

Current chains

Chain B

X. oryzae Mn riboswitch optimized construct

Nearby chains

Chain A

X. oryzae Mn riboswitch optimized construct