6N2V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6N2V_001 | 1/A/24:29 | GNRA HL_37824.7 | ||
| HL_6N2V_002 | 1/A/56:61 | GNRA HL_37824.7 | ||
| HL_6N2V_003 | 1/A/76:81 | GNRA HL_37824.7 | ||
| HL_6N2V_004 | 1/B/24:29 | GNRA | geometric HL_6CU1_002 HL_37824.7 | |
| HL_6N2V_005 | 1/B/56:61 | GNRA related | geometric HL_2NUE_001 HL_53890.2 | |
| HL_6N2V_006 | 1/B/76:81 | GNRA | geometric HL_5TPY_006 HL_37824.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6N2V_001 | 1/A/7:14, 1/A/88:93 | 8x6 Sarcin-Ricin with bulged A; G-bulge IL_02349.4 | ||
| IL_6N2V_002 | 1/A/45:53, 1/A/64:65 | Minor groove platform IL_33711.1 | ||
| IL_6N2V_003 | 1/B/7:14, 1/B/88:93 | 8x6 Sarcin-Ricin with bulged A; G-bulge | geometric IL_4Y1M_006 IL_02349.4 | |
| IL_6N2V_004 | 1/B/45:53, 1/B/64:65 | Minor groove platform | geometric IL_6CB3_004 IL_33711.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_6N2V_001 | 1/A/16:18, 1/A/35:37, 1/A/73:74, 1/A/83:86 | No text annotation J4_65052.1 | ||
| J4_6N2V_003 | 1/B/16:18, 1/B/35:37, 1/B/73:74, 1/B/83:86 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_6N2V_002 | No text annotation |
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