HL_6N2V_005

3D structure

PDB id

6N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manganese riboswitch from Xanthmonas oryzae bound to Mn(II)

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

6N2V|1|B|A|58

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N2V_005 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.2418

The information below is about HL_2NUE_001

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6N2V|1|B|C|56
6N2V|1|B|G|57
6N2V|1|B|A|58
6N2V|1|B|A|59
6N2V|1|B|A|60
6N2V|1|B|G|61

Current chains

Chain B

X. oryzae Mn riboswitch optimized construct

Nearby chains

Chain A

X. oryzae Mn riboswitch optimized construct