HL_6N5T_003

3D structure

PDB id

6N5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch Scaffold

Experimental method

X-RAY DIFFRACTION

Resolution

2.79 Å

Loop

Sequence

UACCUUCUG

Length

9 nucleotides

Bulged bases

6N5T|1|A|A|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N5T_003 not in the Motif Atlas

Homologous match to HL_6N5P_003

Geometric discrepancy: 0.0348

The information below is about HL_6N5P_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6N5T|1|A|U|75
6N5T|1|A|A|76
6N5T|1|A|C|77
6N5T|1|A|C|78
6N5T|1|A|U|79
6N5T|1|A|U|80
6N5T|1|A|C|81
6N5T|1|A|U|82
6N5T|1|A|G|83

Current chains

Chain A

RNA (126-MER)

Nearby chains