HL_6N8J_060

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGUUCAUAGC

Length

11 nucleotides

Bulged bases

6N8J|1|1|U|2842, 6N8J|1|1|U|2843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8J|1|1|G|2839
6N8J|1|1|C|2840
6N8J|1|1|G|2841
6N8J|1|1|U|2842
6N8J|1|1|U|2843
6N8J|1|1|C|2844
6N8J|1|1|A|2845
6N8J|1|1|U|2846
6N8J|1|1|A|2847
6N8J|1|1|G|2848
6N8J|1|1|C|2849

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain S

60S ribosomal protein L20-A

Chain T

60S ribosomal protein L21-A

Chain r

Ribosome biogenesis protein NSA2