6N8J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6N8J_001 | 1/1/38:45 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_6N8J_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6N8J_003 | 1/1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6N8J_004 | 1/1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_6N8J_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_6N8J_006 | 1/1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6N8J_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6N8J_008 | 1/1/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_6N8J_009 | 1/1/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6N8J_010 | 1/1/357:362 | GNRA | homologous HL_5TBW_010 NA | |
| HL_6N8J_011 | 1/1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6N8J_012 | 1/1/543:548 | No text annotation | homologous HL_5TBW_012 NA | |
| HL_6N8J_013 | 1/1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6N8J_084 | 1/1/640:649 | No text annotation | homologous HL_8CRE_013 HL_28252.8 | |
| HL_6N8J_015 | 1/1/686:694 | No text annotation | homologous HL_5TBW_015 NA | |
| HL_6N8J_016 | 1/1/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_6N8J_017 | 1/1/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_6N8J_018 | 1/1/763:768 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_6N8J_019 | 1/1/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6N8J_020 | 1/1/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6N8J_021 | 1/1/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6N8J_022 | 1/1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6N8J_024 | 1/1/1076:1083 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_6N8J_025 | 1/1/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6N8J_026 | 1/1/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6N8J_027 | 1/1/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_6N8J_028 | 1/1/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_6N8J_029 | 1/1/1347:1357 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_6N8J_030 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6N8J_085 | 1/1/1462:1470 | No text annotation | homologous HL_8CRE_030 HL_28252.8 | |
| HL_6N8J_032 | 1/1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6N8J_033 | 1/1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6N8J_034 | 1/1/1566:1572 | No text annotation | ||
| HL_6N8J_035 | 1/1/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6N8J_036 | 1/1/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6N8J_037 | 1/1/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_6N8J_038 | 1/1/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6N8J_039 | 1/1/1760:1765 | GNRA related | homologous HL_5TBW_039 NA | |
| HL_6N8J_040 | 1/1/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_6N8J_041 | 1/1/1844:1851 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6N8J_042 | 1/1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6N8J_043 | 1/1/1923:1928 | UNCG | homologous HL_5TBW_043 NA | |
| HL_6N8J_045 | 1/1/2110:2114 | No text annotation | ||
| HL_6N8J_046 | 1/1/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6N8J_047 | 1/1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6N8J_048 | 1/1/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6N8J_049 | 1/1/2369:2378 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6N8J_078 | 1/1/2534:2545 | tRNA D-loop | geometric HL_7UQ6_001 HL_20811.4 | |
| HL_6N8J_052 | 1/1/2568:2573 | No text annotation | homologous HL_5TBW_053 NA | |
| HL_6N8J_054 | 1/1/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_6N8J_086 | 1/1/2673:2681 | No text annotation | homologous HL_8CRE_055 HL_50860.2 | |
| HL_6N8J_056 | 1/1/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6N8J_057 | 1/1/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6N8J_058 | 1/1/2744:2749 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6N8J_059 | 1/1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6N8J_080 | 1/1/2840:2848 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_6N8J_061 | 1/1/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6N8J_062 | 1/1/2918:2928 | No text annotation | ||
| HL_6N8J_063 | 1/1/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6N8J_064 | 1/1/3025:3030 | GNRA | homologous HL_5TBW_065 NA | |
| HL_6N8J_065 | 1/1/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6N8J_066 | 1/1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6N8J_082 | 1/1/3193:3199 | No text annotation | homologous HL_8P9A_179 HL_08100.1 | |
| HL_6N8J_067 | 1/1/3194:3197 | No text annotation | homologous HL_5TBW_068 NA | |
| HL_6N8J_068 | 1/1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_6N8J_069 | 1/1/3303:3311 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_6N8J_070 | 1/1/3345:3360 | No text annotation | ||
| HL_6N8J_071 | 1/2/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6N8J_072 | 1/2/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6N8J_083 | 1/3/47:56 | No text annotation | homologous HL_8P9A_186 HL_93438.2 | |
| HL_6N8J_073 | 1/3/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_6N8J_074 | 1/3/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6N8J_075 | 1/3/124:129 | No text annotation | homologous HL_5TBW_076 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6N8J_076 | No text annotation | ||
| HL_6N8J_014 | No text annotation | ||
| HL_6N8J_023 | No text annotation | ||
| HL_6N8J_031 | No text annotation | ||
| HL_6N8J_044 | No text annotation | ||
| HL_6N8J_077 | GNRA with extra cWW | ||
| HL_6N8J_050 | No text annotation | ||
| HL_6N8J_051 | No text annotation | ||
| HL_6N8J_053 | No text annotation | ||
| HL_6N8J_079 | No text annotation | ||
| HL_6N8J_055 | No text annotation | ||
| HL_6N8J_060 | No text annotation | ||
| HL_6N8J_081 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6N8J_002 | 1/1/7:8, 1/3/150:152 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_6N8J_140 | 1/1/13:15, 1/3/144:145 | No text annotation | homologous IL_8CRE_003 IL_89505.4 | |
| IL_6N8J_004 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_6N8J_005 | 1/1/82:89, 1/1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_6N8J_006 | 1/1/123:124, 1/1/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6N8J_007 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6N8J_008 | 1/1/163:165, 1/1/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_6N8J_009 | 1/1/169:170, 1/1/248:253 | No text annotation | homologous IL_5TBW_010 NA | |
| IL_6N8J_126 | 1/1/177:178, 1/1/238:241 | No text annotation | geometric IL_5TBW_501 NA | |
| IL_6N8J_011 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_6N8J_012 | 1/1/337:339, 1/3/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6N8J_013 | 1/1/376:379, 1/1/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_6N8J_014 | 1/1/404:410, 1/3/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6N8J_015 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_6N8J_017 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_6N8J_018 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6N8J_019 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_6N8J_020 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_6N8J_021 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6N8J_022 | 1/1/725:728, 1/1/741:745 | UAA/GAN | homologous IL_5TBW_023 NA | |
| IL_6N8J_023 | 1/1/752:753, 1/1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6N8J_024 | 1/1/755:756, 1/1/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_6N8J_025 | 1/1/758:763, 1/1/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_6N8J_026 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_6N8J_027 | 1/1/805:809, 1/1/931:938 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_6N8J_028 | 1/1/833:834, 1/1/859:861 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_6N8J_029 | 1/1/834:838, 1/1/855:859 | Triple sheared | homologous IL_5TBW_030 NA | |
| IL_6N8J_030 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_6N8J_031 | 1/1/873:875, 1/1/886:887 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_6N8J_032 | 1/1/907:909, 1/1/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6N8J_033 | 1/1/954:956, 1/1/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_6N8J_034 | 1/1/969:970, 1/1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6N8J_128 | 1/1/977:981, 1/1/1102:1104 | No text annotation | homologous IL_8P9A_264 IL_25463.1 | |
| IL_6N8J_036 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6N8J_037 | 1/1/1069:1072, 1/1/1086:1089 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_6N8J_038 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_6N8J_039 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6N8J_040 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6N8J_041 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_6N8J_042 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_6N8J_043 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_6N8J_044 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6N8J_045 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6N8J_046 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_6N8J_129 | 1/1/1232:1238, 1/1/1250:1256 | No text annotation | ||
| IL_6N8J_047 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_6N8J_048 | 1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW | homologous IL_5TBW_056 NA | |
| IL_6N8J_049 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6N8J_050 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_6N8J_051 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6N8J_052 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6N8J_053 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6N8J_054 | 1/1/1500:1505, 1/1/1513:1516 | No text annotation | homologous IL_5TBW_062 NA | |
| IL_6N8J_055 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6N8J_056 | 1/1/1562:1566, 1/1/1572:1577 | No text annotation | ||
| IL_6N8J_057 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_6N8J_141 | 1/1/1623:1624, 1/1/1819:1822 | Major groove platform related | homologous IL_8P9A_293 IL_48076.6 | |
| IL_6N8J_142 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation | homologous IL_8CRE_071 IL_56317.1 | |
| IL_6N8J_060 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_6N8J_061 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_5TBW_068 NA | |
| IL_6N8J_062 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_6N8J_063 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_6N8J_064 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation | homologous IL_5TBW_071 NA | |
| IL_6N8J_065 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_6N8J_066 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6N8J_143 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | homologous IL_8CRE_079 IL_22829.2 | |
| IL_6N8J_068 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6N8J_069 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6N8J_131 | 1/1/1898:1906, 1/1/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6N8J_070 | 1/1/1901:1906, 1/1/2333:2336 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
| IL_6N8J_071 | 1/1/1918:1923, 1/1/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_6N8J_072 | 1/1/1940:1942, 1/1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6N8J_073 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_6N8J_074 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6N8J_075 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6N8J_077 | 1/1/2196:2199, 1/1/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_6N8J_078 | 1/1/2200:2201, 1/1/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6N8J_079 | 1/1/2204:2206, 1/1/2237:2238 | Single bulged U | homologous IL_5TBW_086 NA | |
| IL_6N8J_080 | 1/1/2206:2210, 1/1/2235:2237 | Major groove platform with extra pair | geometric IL_5TBW_087 NA | |
| IL_6N8J_081 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6N8J_082 | 1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6N8J_083 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6N8J_084 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6N8J_085 | 1/1/2423:2425, 1/1/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_6N8J_086 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_6N8J_087 | 1/1/2666:2668, 1/1/2686:2690 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_6N8J_088 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6N8J_144 | 1/1/2770:2773, 1/1/2787:2788 | No text annotation | homologous IL_8CRE_110 IL_79895.1 | |
| IL_6N8J_090 | 1/1/2835:2839, 1/1/2849:2853 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
| IL_6N8J_091 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6N8J_092 | 1/1/2881:2882, 1/1/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6N8J_093 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_6N8J_094 | 1/1/2891:2893, 1/1/2908:2912 | No text annotation | ||
| IL_6N8J_095 | 1/1/2960:2961, 1/1/2970:2972 | Minor groove platform | geometric IL_7A0S_028 IL_51454.3 | |
| IL_6N8J_096 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_6N8J_097 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6N8J_098 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6N8J_145 | 1/1/3047:3051, 1/1/3091:3094 | No text annotation | homologous IL_8P9A_345 IL_83150.2 | |
| IL_6N8J_100 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_6N8J_101 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6N8J_102 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN | homologous IL_5TBW_120 NA | |
| IL_6N8J_146 | 1/1/3164:3166, 1/1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8CRE_130 IL_87907.2 | |
| IL_6N8J_104 | 1/1/3168:3170, 1/1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_6N8J_105 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_6N8J_106 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_6N8J_107 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_6N8J_108 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_5TBW_126 NA | |
| IL_6N8J_109 | 1/1/3233:3235, 1/1/3252:3254 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6N8J_110 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_6N8J_147 | 1/1/3300:3303, 1/1/3311:3314 | No text annotation | geometric IL_8P9A_356 IL_77658.1 | |
| IL_6N8J_111 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U | homologous IL_5TBW_130 NA | |
| IL_6N8J_112 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_6N8J_113 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6N8J_114 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_6N8J_115 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U | geometric IL_2R8S_004 IL_89505.4 | |
| IL_6N8J_116 | 1/1/3342:3345, 1/1/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6N8J_117 | 1/2/15:16, 1/2/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6N8J_118 | 1/2/21:29, 1/2/49:58 | No text annotation | ||
| IL_6N8J_139 | 1/2/21:30, 1/2/47:58 | No text annotation | ||
| IL_6N8J_119 | 1/2/29:30, 1/2/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_6N8J_120 | 1/2/32:36, 1/2/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_6N8J_121 | 1/2/72:80, 1/2/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6N8J_122 | 1/2/84:87, 1/2/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6N8J_123 | 1/3/44:64, 1/3/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_6N8J_124 | 1/3/64:66, 1/3/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6N8J_125 | 1/3/68:69, 1/3/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6N8J_001 | No text annotation | ||
| IL_6N8J_003 | Isolated non-canonical cWW pair | ||
| IL_6N8J_010 | Major groove platform with extra pair | ||
| IL_6N8J_016 | Kink-turn related | ||
| IL_6N8J_127 | Isolated non-canonical cWW pair | ||
| IL_6N8J_035 | Kink-turn related | ||
| IL_6N8J_058 | Multiple bulged bases with near cWW | ||
| IL_6N8J_059 | No text annotation | ||
| IL_6N8J_067 | No text annotation | ||
| IL_6N8J_130 | No text annotation | ||
| IL_6N8J_132 | No text annotation | ||
| IL_6N8J_076 | No text annotation | ||
| IL_6N8J_133 | Partly complementary | ||
| IL_6N8J_134 | No text annotation | ||
| IL_6N8J_089 | No text annotation | ||
| IL_6N8J_135 | No text annotation | ||
| IL_6N8J_099 | No text annotation | ||
| IL_6N8J_136 | Isolated non-canonical cWW pair | ||
| IL_6N8J_103 | No text annotation | ||
| IL_6N8J_137 | No text annotation | ||
| IL_6N8J_138 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6N8J_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_6N8J_017 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_6N8J_018 | 1/1/340:356, 1/1/363:368, 1/3/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6N8J_002 | 1/1/369:376, 1/1/403:404, 1/3/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6N8J_019 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_8P9A_048 J3_83726.1 | |
| J3_6N8J_032 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | homologous J3_8CRE_009 J3_64189.2 | |
| J3_6N8J_005 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6N8J_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_6N8J_007 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_6N8J_021 | 1/1/1230:1232, 1/1/1256:1266, 1/1/1275:1279 | No text annotation | ||
| J3_6N8J_022 | 1/1/1230:1238, 1/1/1250:1266, 1/1/1275:1279 | No text annotation | ||
| J3_6N8J_008 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6N8J_009 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_6N8J_010 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6N8J_033 | 1/1/1537:1542, 1/1/1551:1560, 1/1/1579:1584 | No text annotation | ||
| J3_6N8J_011 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6N8J_025 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6N8J_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_6N8J_026 | 1/1/2529:2533, 1/1/2546:2563, 1/1/2578:2581 | No text annotation | ||
| J3_6N8J_027 | 1/1/2651:2653, 1/1/2754:2765, 1/1/2793:2798 | No text annotation | homologous J3_8P9A_061 J3_20992.1 | |
| J3_6N8J_013 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6N8J_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | ||
| J3_6N8J_028 | 1/1/2886:2891, 1/1/2912:2916, 1/1/2930:2936 | No text annotation | ||
| J3_6N8J_029 | 1/1/3170:3176, 1/1/3212:3220, 1/1/3265:3280 | No text annotation | ||
| J3_6N8J_034 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_6N8J_030 | 1/2/9:14, 1/2/66:67, 1/2/111:112 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_6N8J_031 | 1/3/44:45, 1/3/58:64, 1/3/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J4_6N8J_009 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6N8J_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_6N8J_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_6N8J_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_6N8J_005 | 1/1/1674:1675, 1/1/1693:1698, 1/1/1747:1753, 1/1/1772:1773 | No text annotation | ||
| J4_6N8J_006 | 1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6N8J_010 | 1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753 | No text annotation | homologous J4_8CRE_008 J4_04930.6 | |
| J4_6N8J_008 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J5_6N8J_008 | 1/1/20:22, 1/3/35:42, 1/3/102:107, 1/3/115:116, 1/3/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_6N8J_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_6N8J_009 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_6N8J_004 | 1/1/1492:1496, 1/1/1520:1531, 1/1/1591:1595, 1/1/1612:1615, 1/1/1829:1836 | No text annotation | ||
| J5_6N8J_005 | 1/1/1906:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_6N8J_010 | 1/1/2396:2405, 1/1/2816:2832, 1/1/2856:2877, 1/1/2949:2957, 1/1/2975:2984 | No text annotation | ||
| J5_6N8J_011 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_6N8J_001 | 1/1/22:28, 1/1/56:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/3/32:35 | No text annotation | ||
| J6_6N8J_002 | 1/1/2415:2420, 1/1/2610:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2805 | No text annotation | ||
| J6_6N8J_003 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2804 | No text annotation | ||
| J7_6N8J_001 | 1/1/949:954, 1/1/967:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6N8J_003 | No text annotation | ||
| J3_6N8J_004 | No text annotation | ||
| J3_6N8J_020 | No text annotation | ||
| J3_6N8J_023 | No text annotation | ||
| J3_6N8J_024 | No text annotation | ||
| J3_6N8J_015 | No text annotation | ||
| J3_6N8J_016 | No text annotation | ||
| J4_6N8J_001 | No text annotation | ||
| J4_6N8J_007 | No text annotation | ||
| J5_6N8J_001 | No text annotation | ||
| J5_6N8J_003 | No text annotation | ||
| J5_6N8J_006 | No text annotation | ||
| J5_6N8J_007 | No text annotation |
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