HL_6N8J_075

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6N8J|1|3|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8J_075 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1767

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6N8J|1|3|G|124
6N8J|1|3|U|125
6N8J|1|3|A|126
6N8J|1|3|U|127
6N8J|1|3|U|128
6N8J|1|3|C|129

Current chains

Chain 3

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA