HL_6N8J_076

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

6N8J|1|1|U|545, 6N8J|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8J_076 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.261

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8J|1|1|G|542
6N8J|1|1|C|543
6N8J|1|1|C|544
6N8J|1|1|U|545
6N8J|1|1|C|546
6N8J|1|1|G|547
6N8J|1|1|G|548
6N8J|1|1|U|549

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains