HL_6N8J_078
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAUUCAUUUUC
- Length
- 12 nucleotides
- Bulged bases
- 6N8J|1|1|C|2539, 6N8J|1|1|A|2540
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8J_078 not in the Motif Atlas
- Geometric match to HL_7UQ6_001
- Geometric discrepancy: 0.2908
- The information below is about HL_7UQ6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6N8J|1|1|G|2534
6N8J|1|1|A|2535
6N8J|1|1|A|2536
6N8J|1|1|U|2537
6N8J|1|1|U|2538
6N8J|1|1|C|2539
6N8J|1|1|A|2540
6N8J|1|1|U|2541
6N8J|1|1|U|2542
6N8J|1|1|U|2543
6N8J|1|1|U|2544
6N8J|1|1|C|2545
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain g
- 60S ribosomal protein L34-A
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