3D structure

PDB id
6N8J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGAGAACAGAAAUCUCC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6N8J|1|1|G|2669
6N8J|1|1|G|2670
6N8J|1|1|A|2671
6N8J|1|1|G|2672
6N8J|1|1|A|2673
6N8J|1|1|A|2674
6N8J|1|1|C|2675
6N8J|1|1|A|2676
6N8J|1|1|G|2677
6N8J|1|1|A|2678
6N8J|1|1|A|2679
6N8J|1|1|A|2680
6N8J|1|1|U|2681
6N8J|1|1|C|2682
6N8J|1|1|U|2683
6N8J|1|1|C|2684
6N8J|1|1|C|2685

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain J
60S ribosomal protein L11-A

Coloring options:

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