HL_6N8K_049
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGUUAUGACUC
- Length
- 12 nucleotides
- Bulged bases
- 6N8K|1|1|G|2261
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8K_049 not in the Motif Atlas
- Geometric match to HL_4TUE_033
- Geometric discrepancy: 0.3935
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6N8K|1|1|G|2251
6N8K|1|1|A|2252
6N8K|1|1|G|2253
6N8K|1|1|U|2254
6N8K|1|1|U|2258
6N8K|1|1|A|2259
6N8K|1|1|U|2260
6N8K|1|1|G|2261
6N8K|1|1|A|2262
6N8K|1|1|C|2263
6N8K|1|1|U|2264
6N8K|1|1|C|2265
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain v
- 60S ribosomal export protein NMD3
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