HL_6N8K_063

3D structure

PDB id

6N8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6N8K|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8K_063 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.2839

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6N8K|1|1|A|2897
6N8K|1|1|G|2898
6N8K|1|1|C|2899
6N8K|1|1|A|2900
6N8K|1|1|G|2901
6N8K|1|1|A|2902
6N8K|1|1|A|2903
6N8K|1|1|U|2904

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain b

Nucleolar GTP-binding protein 1