HL_6N8L_056

3D structure

PDB id

6N8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6N8L|1|1|A|2637, 6N8L|1|1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8L_056 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1269

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6N8L|1|1|U|2633
6N8L|1|1|U|2634
6N8L|1|1|A|2635
6N8L|1|1|A|2636
6N8L|1|1|A|2637
6N8L|1|1|C|2638
6N8L|1|1|G|2639
6N8L|1|1|A|2640
6N8L|1|1|U|2641
6N8L|1|1|A|2642
6N8L|1|1|A|2643
6N8L|1|1|C|2644
6N8L|1|1|G|2645

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain o

60S ribosomal protein L29