HL_6N8L_057
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAACAGAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8L_057 not in the Motif Atlas
- Geometric match to HL_5J7L_188
- Geometric discrepancy: 0.2429
- The information below is about HL_5J7L_188
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11805.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6N8L|1|1|G|2672
6N8L|1|1|A|2673
6N8L|1|1|A|2674
6N8L|1|1|C|2675
6N8L|1|1|A|2676
6N8L|1|1|G|2677
6N8L|1|1|A|2678
6N8L|1|1|A|2679
6N8L|1|1|A|2680
6N8L|1|1|U|2681
6N8L|1|1|C|2682
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain J
- 60S ribosomal protein L11-A
Coloring options: