HL_6N8L_080
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGGUAAGCA
- Length
- 9 nucleotides
- Bulged bases
- 6N8L|1|1|G|1131
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8L_080 not in the Motif Atlas
- Geometric match to HL_4V90_032
- Geometric discrepancy: 0.3233
- The information below is about HL_4V90_032
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6N8L|1|1|U|1125
6N8L|1|1|G|1126
6N8L|1|1|G|1127
6N8L|1|1|U|1128
6N8L|1|1|A|1129
6N8L|1|1|A|1130
6N8L|1|1|G|1131
6N8L|1|1|C|1132
6N8L|1|1|A|1133
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain o
- 60S ribosomal protein L29
- Chain v
- 60S ribosomal export protein NMD3
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