HL_6N8M_023

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6N8M|1|A|A|1025, 6N8M|1|A|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8M_023 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.3774

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6N8M|1|A|C|1023
6N8M|1|A|G|1024
6N8M|1|A|A|1025
6N8M|1|A|A|1026
6N8M|1|A|A|1027
6N8M|1|A|U|1028
6N8M|1|A|G|1029

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain V

60S ribosomal export protein NMD3