HL_6N8N_014
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUCUUGAAACAC
- Length
- 12 nucleotides
- Bulged bases
- 6N8N|1|A|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8N_014 not in the Motif Atlas
- Geometric match to HL_4V88_219
- Geometric discrepancy: 0.3789
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6N8N|1|A|G|639
6N8N|1|A|U|640
6N8N|1|A|C|641
6N8N|1|A|U|642
6N8N|1|A|U|643
6N8N|1|A|G|644
6N8N|1|A|A|645
6N8N|1|A|A|646
6N8N|1|A|A|647
6N8N|1|A|C|648
6N8N|1|A|A|649
6N8N|1|A|C|650
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain n
- 60S ribosomal protein L28
- Chain r
- 60S ribosomal protein L32
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