HL_6N8N_029
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 6N8N|1|A|U|1348, 6N8N|1|A|U|1351, 6N8N|1|A|A|1352, 6N8N|1|A|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8N_029 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.3548
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6N8N|1|A|U|1347
6N8N|1|A|U|1348
6N8N|1|A|G|1349
6N8N|1|A|A|1350
6N8N|1|A|U|1351
6N8N|1|A|A|1352
6N8N|1|A|U|1353
6N8N|1|A|G|1354
6N8N|1|A|A|1355
6N8N|1|A|U|1356
6N8N|1|A|G|1357
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain H
- 60S ribosomal protein L6-A
- Chain d
- 60S ribosomal protein L18-A
- Chain r
- 60S ribosomal protein L32
Coloring options: