HL_6N8N_079

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUCUUGAAACACG

Length

14 nucleotides

Bulged bases

6N8N|1|A|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|C|638
6N8N|1|A|G|639
6N8N|1|A|U|640
6N8N|1|A|C|641
6N8N|1|A|U|642
6N8N|1|A|U|643
6N8N|1|A|G|644
6N8N|1|A|A|645
6N8N|1|A|A|646
6N8N|1|A|A|647
6N8N|1|A|C|648
6N8N|1|A|A|649
6N8N|1|A|C|650
6N8N|1|A|G|651

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain n

60S ribosomal protein L28

Chain r

60S ribosomal protein L32