HL_8GLP_016
3D structure
- PDB id
- 8GLP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- C(OMG)UCUUG(1MA)AAC(A2M)CG
- Length
- 14 nucleotides
- Bulged bases
- 8GLP|1|L5|C|1325
- QA status
- Modified nucleotides: OMG, 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8GLP_016 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1319
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
8GLP|1|L5|C|1315
8GLP|1|L5|OMG|1316
8GLP|1|L5|U|1317
8GLP|1|L5|C|1318
8GLP|1|L5|U|1319
8GLP|1|L5|U|1320
8GLP|1|L5|G|1321
8GLP|1|L5|1MA|1322
8GLP|1|L5|A|1323
8GLP|1|L5|A|1324
8GLP|1|L5|C|1325
8GLP|1|L5|A2M|1326
8GLP|1|L5|C|1327
8GLP|1|L5|G|1328
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain Le
- 60S ribosomal protein L32
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