HL_6N8N_083
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUCUAAUUAGU
- Length
- 11 nucleotides
- Bulged bases
- 6N8N|1|A|U|2298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8N_083 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.353
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6N8N|1|A|A|2291
6N8N|1|A|U|2292
6N8N|1|A|C|2293
6N8N|1|A|U|2294
6N8N|1|A|A|2295
6N8N|1|A|A|2296
6N8N|1|A|U|2297
6N8N|1|A|U|2298
6N8N|1|A|A|2299
6N8N|1|A|G|2300
6N8N|1|A|U|2301
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain V
- 60S ribosomal export protein NMD3
- Chain W
- Large subunit GTPase 1
- Chain i
- 60S ribosomal protein L23-A
Coloring options: