HL_6N8N_092

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6N8N|1|A|U|879, 6N8N|1|A|A|883, 6N8N|1|A|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8N_092 not in the Motif Atlas

Homologous match to HL_8CRE_019

Geometric discrepancy: 0.1311

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6N8N|1|A|A|876
6N8N|1|A|C|877
6N8N|1|A|G|878
6N8N|1|A|U|879
6N8N|1|A|G|880
6N8N|1|A|C|881
6N8N|1|A|A|882
6N8N|1|A|A|883
6N8N|1|A|A|884
6N8N|1|A|U|885

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain c

60S ribosomal protein L17-A

Chain w

60S ribosomal protein L37-A