Motif HL_88205.2 Version HL_88205.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 5-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_155 | 5J7L | 0.2700 | 3 | DA | LSU rRNA | U | 744 | 1MG | 745 | PSU | 746 | G | 748 | A | 749 | A | 750 | A | 753 | cWW | tSW | cWS |
| 2 | HL_7A0S_022 | 7A0S | 0.2130 | 3 | X | LSU rRNA | U | 757 | G | 758 | C | 759 | G | 761 | A | 762 | A | 763 | A | 766 | cWW | tSW | cWS |
| 3 | HL_4WF9_023 | 4WF9 | 0.2293 | 3 | X | LSU rRNA | C | 789 | G | 790 | U | 791 | G | 793 | A | 794 | A | 795 | G | 798 | cWW | tSW | cWS |
| 4 | HL_9DFE_021 | 9DFE | 0.1760 | 3 | 1A | LSU rRNA | G | 744 | G | 745 | A | 746 | G | 748 | C | 749 | A | 750 | C | 753 | cWW | tSW | cWS |
| 5 | HL_4V9F_024 | 4V9F | 0.1322 | 3 | 0 | LSU rRNA | U | 837 | C | 838 | C | 839 | A | 841 | C | 842 | A | 843 | A | 846 | cWW | tSW | cWS |
| 6 | HL_8P9A_132 | 8P9A | 0.0000 | 3 | AR | LSU rRNA | A | 876 | C | 877 | G | 878 | G | 880 | C | 881 | A | 882 | U | 885 | cWW | tSW | cWS |
| 7 | HL_8CRE_019 | 8CRE | 0.0731 | 3 | 1 | LSU rRNA | A | 872 | C | 873 | G | 874 | G | 876 | C | 877 | A | 878 | U | 881 | cWW | tSW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGUGCAAAU | 2 |
| UGAAAAA | 1 |
| UGCUGAAACA | 1 |
| CGUUGAAAAG | 1 |
| GGAUGCAAAC | 1 |
| UCCUACAAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUGCAAA | 2 |
| (1MG)(PSU)(5MU)GAAAA | 1 |
| GCUGAAAC | 1 |
| GUUGAAAA | 1 |
| GAUGCAAA | 1 |
| CCUACAAU | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cWS-tSW-F-F
- Heat map statistics
- Min 0.07 | Avg 0.18 | Max 0.34
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