HL_6N8O_022

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6N8O|1|A|C|959, 6N8O|1|A|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8O_022 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.2809

The information below is about HL_5TBW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.3

Basepair signature

cWW

Number of instances in this motif group

16

Unit IDs

6N8O|1|A|C|958
6N8O|1|A|C|959
6N8O|1|A|U|960
6N8O|1|A|C|961
6N8O|1|A|A|962
6N8O|1|A|G|963

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain Q

60S ribosomal protein L42-A

Chain n

60S ribosomal protein L28

Chain o

60S ribosomal protein L29