HL_6N8O_031

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAUGAGAACUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8O_031 not in the Motif Atlas

Geometric match to HL_4WSM_226

Geometric discrepancy: 0.3802

The information below is about HL_4WSM_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6N8O|1|A|A|1461
6N8O|1|A|A|1462
6N8O|1|A|U|1463
6N8O|1|A|G|1464
6N8O|1|A|A|1465
6N8O|1|A|G|1466
6N8O|1|A|A|1467
6N8O|1|A|A|1468
6N8O|1|A|C|1469
6N8O|1|A|U|1470
6N8O|1|A|U|1471

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain c

60S ribosomal protein L17-A

Chain e

60S ribosomal protein L19-A

Chain q

60S ribosomal protein L31-A