HL_6N8O_068

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6N8O|1|A|G|3116, 6N8O|1|A|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8O_068 not in the Motif Atlas

Homologous match to HL_5TBW_067

Geometric discrepancy: 0.0993

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.8

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6N8O|1|A|C|3110
6N8O|1|A|U|3111
6N8O|1|A|G|3112
6N8O|1|A|A|3113
6N8O|1|A|A|3114
6N8O|1|A|C|3115
6N8O|1|A|G|3116
6N8O|1|A|C|3117
6N8O|1|A|C|3118
6N8O|1|A|U|3119
6N8O|1|A|C|3120
6N8O|1|A|U|3121
6N8O|1|A|A|3122
6N8O|1|A|A|3123
6N8O|1|A|G|3124

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain K

60S ribosomal protein L9-A

Chain b

60S ribosomal protein L16-A

Chain z

Ubiquitin-60S ribosomal protein L40