HL_6N8O_069

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

6N8O|1|A|U|3195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8O_069 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.1815

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45598.1

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

6N8O|1|A|C|3194
6N8O|1|A|U|3195
6N8O|1|A|U|3196
6N8O|1|A|G|3197

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain K

60S ribosomal protein L9-A

Chain O

60S ribosomal protein L14-A