HL_6N8O_078
3D structure
- PDB id
- 6N8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGGUAAGCA
- Length
- 9 nucleotides
- Bulged bases
- 6N8O|1|A|G|1131
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8O_078 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.2897
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6N8O|1|A|U|1125
6N8O|1|A|G|1126
6N8O|1|A|G|1127
6N8O|1|A|U|1128
6N8O|1|A|A|1129
6N8O|1|A|A|1130
6N8O|1|A|G|1131
6N8O|1|A|C|1132
6N8O|1|A|A|1133
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain Z
- 60S ribosomal protein L10
- Chain o
- 60S ribosomal protein L29
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