HL_6N8O_085

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAGCCUUGUUGUUA

Length

14 nucleotides

Bulged bases

6N8O|1|A|U|3351, 6N8O|1|A|U|3354, 6N8O|1|A|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8O_085 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3288

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6N8O|1|A|U|3346
6N8O|1|A|A|3347
6N8O|1|A|G|3348
6N8O|1|A|C|3349
6N8O|1|A|C|3350
6N8O|1|A|U|3351
6N8O|1|A|U|3352
6N8O|1|A|G|3353
6N8O|1|A|U|3354
6N8O|1|A|U|3355
6N8O|1|A|G|3356
6N8O|1|A|U|3357
6N8O|1|A|U|3358
6N8O|1|A|A|3359

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains