HL_6N9E_191

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9E_191 not in the Motif Atlas

Homologous match to HL_6CZR_086

Geometric discrepancy: 0.1129

The information below is about HL_6CZR_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6N9E|1|2a|C|689
6N9E|1|2a|G|690
6N9E|1|2a|G|691
6N9E|1|2a|U|692
6N9E|1|2a|G|693
6N9E|1|2a|A|694
6N9E|1|2a|A|695
6N9E|1|2a|A|696
6N9E|1|2a|U|697
6N9E|1|2a|G|698

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2g

30S Ribosomal Protein S7

Chain 2k

30S ribosomal protein S11

Chain 2v

mRNA